BioSODA (search over databases - QALD-4 prototype)

QALD-4 Summary Graph

Keyword Query: Which experimental drugs interact with food?

Selected Matches (one example per class-property pair, limited to top 5):

• RESULT 1
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ] ---> <http://www.w3.org/2001/XMLSchema#string>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>]]
  
  
  Keyword: drugs interact Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions
  Keyword: food [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> property <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/foodInteraction>]
  Keyword: experimental Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId
  
  SPARQL query:
  SELECT DISTINCT ?drug_interactions ?drug_interactions_label ?drugs ?drugs_foodinteraction ?drugs_label ?drugs_pdbexperimentalid WHERE {
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ?drugs_pdbexperimentalid.
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?drug_interactions <http://www.w3.org/2000/01/rdf-schema#label> ?drug_interactions_label.
  

  ?drugs a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>.
  

  ?drug_interactions a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions>.
  

  ?drug_interactions <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drugs.
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/foodInteraction> ?drugs_foodinteraction.
  

  FILTER (contains(lcase(str(?drugs_foodinteraction)), "food"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 2
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ] ---> <http://www.w3.org/2001/XMLSchema#string>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>]]
  
  
  Keyword: drugs interact Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions
  Keyword: food [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> property <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/foodInteraction>]
  Keyword: experimental Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId
  
  SPARQL query:
  SELECT DISTINCT ?drug_interactions ?drug_interactions_label ?drugs ?drugs_foodinteraction ?drugs_label ?drugs_pdbexperimentalid WHERE {
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ?drugs_pdbexperimentalid.
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?drug_interactions <http://www.w3.org/2000/01/rdf-schema#label> ?drug_interactions_label.
  

  ?drugs a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>.
  

  ?drug_interactions <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drugs.
  

  ?drug_interactions a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions>.
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/foodInteraction> ?drugs_foodinteraction.
  

  FILTER (contains(lcase(str(?drugs_foodinteraction)), "food"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 3
  Spanning-Tree [weight=4.0, edges=[<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ] ---> <http://www.w3.org/2001/XMLSchema#string>, <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffect> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>]]
  
  
  Keyword: drugs interact Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions
  Keyword: food [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> property <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName>]
  Keyword: experimental Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId
  
  SPARQL query:
  SELECT DISTINCT ?drug_interactions ?drug_interactions_label ?drugs ?drugs1 ?drugs_label ?drugs_pdbexperimentalid ?side_effects ?side_effects_label ?side_effects_sideeffectname WHERE {
  

  ?drugs1 <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffect> ?side_effects.
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ?drugs_pdbexperimentalid.
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?drug_interactions <http://www.w3.org/2000/01/rdf-schema#label> ?drug_interactions_label.
  

  ?drugs a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>.
  

  ?drugs1 a <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>.
  

  ?side_effects <http://www.w3.org/2000/01/rdf-schema#label> ?side_effects_label.
  

  ?drug_interactions a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions>.
  

  ?drug_interactions <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drugs.
  

  {{ ?drugs <http://www.w3.org/2002/07/owl#sameAs> ?drugs1} UNION { ?drugs1 <http://www.w3.org/2002/07/owl#sameAs> ?drugs}}.
  

  ?side_effects <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName> ?side_effects_sideeffectname.
  

  FILTER (contains(lcase(str(?side_effects_sideeffectname)), "food_allergy"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 4
  Spanning-Tree [weight=5.0, edges=[<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ] ---> <http://www.w3.org/2001/XMLSchema#string>, <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffect> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>, <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>]]
  
  
  Keyword: drugs interact Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions
  Keyword: food [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> property <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName>]
  Keyword: experimental Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?drug_interactions ?drug_interactions_label ?drugs ?drugs1 ?drugs_label ?drugs_pdbexperimentalid ?side_effects ?side_effects_label ?side_effects_sideeffectname WHERE {
  

  ?drugs1 <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffect> ?side_effects.
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ?drugs_pdbexperimentalid.
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  ?drugs a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>.
  

  ?drugs1 a <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>.
  

  ?side_effects a <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>.
  

  ?drug_interactions a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions>.
  

  {{ ?side_effects <http://www.w3.org/2002/07/owl#sameAs> ?diseases} UNION { ?diseases <http://www.w3.org/2002/07/owl#sameAs> ?side_effects}}.
  

  {{ ?drugs <http://www.w3.org/2002/07/owl#sameAs> ?drugs1} UNION { ?drugs1 <http://www.w3.org/2002/07/owl#sameAs> ?drugs}}.
  

  ?drug_interactions <http://www.w3.org/2000/01/rdf-schema#label> ?drug_interactions_label.
  

  ?side_effects <http://www.w3.org/2000/01/rdf-schema#label> ?side_effects_label.
  

  ?drug_interactions <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drugs.
  

  ?side_effects <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName> ?side_effects_sideeffectname.
  

  FILTER (contains(lcase(str(?side_effects_sideeffectname)), "food_allergy"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 5
  Spanning-Tree [weight=5.0, edges=[<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ] ---> <http://www.w3.org/2001/XMLSchema#string>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions> --- [ <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>, <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/possibleDrug> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>, <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>, <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>]]
  
  
  Keyword: drugs interact Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions
  Keyword: food [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> property <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName>]
  Keyword: experimental Match: http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?drug_interactions ?drug_interactions_label ?drugs ?drugs1 ?drugs_label ?drugs_pdbexperimentalid ?side_effects ?side_effects_label ?side_effects_sideeffectname WHERE {
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pdbExperimentalId> ?drugs_pdbexperimentalid.
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  ?drugs a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>.
  

  ?side_effects a <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>.
  

  ?drug_interactions a <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drug_interactions>.
  

  {{ ?side_effects <http://www.w3.org/2002/07/owl#sameAs> ?diseases} UNION { ?diseases <http://www.w3.org/2002/07/owl#sameAs> ?side_effects}}.
  

  {{ ?drugs <http://www.w3.org/2002/07/owl#sameAs> ?drugs1} UNION { ?drugs1 <http://www.w3.org/2002/07/owl#sameAs> ?drugs}}.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/possibleDrug> ?drugs.
  

  ?drug_interactions <http://www.w3.org/2000/01/rdf-schema#label> ?drug_interactions_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?drug_interactions <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drugs.
  

  ?side_effects <http://www.w3.org/2000/01/rdf-schema#label> ?side_effects_label.
  

  ?side_effects <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/sideEffectName> ?side_effects_sideeffectname.
  

  FILTER (contains(lcase(str(?side_effects_sideeffectname)), "food_allergy"))
  

  }
  

  LIMIT 100



executing SPARQL...