BioSODA (search over databases - QALD-4 prototype)

QALD-4 Summary Graph

Keyword Query: Which genes are associated with breast cancer?

Selected Matches (one example per class-property pair, limited to top 5):

• RESULT 1
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes>, <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/173> --- [ a ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>]]
  
  
  Keyword: genes Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes
  Keyword: associated Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene
  Keyword: breast cancer [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> property <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/name>]
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?diseases_name ?genes ?genes_label WHERE {
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  ?genes <http://www.w3.org/2000/01/rdf-schema#label> ?genes_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ?genes.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/name> ?diseases_name.
  

  FILTER (contains(lcase(str(?diseases_name)), "breast cancer"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 2
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes>, <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/173> --- [ a ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>]]
  
  
  Keyword: genes Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes
  Keyword: associated Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene
  Keyword: breast cancer [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> property <http://www.w3.org/2000/01/rdf-schema#label>]
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?genes ?genes_label WHERE {
  

  ?genes <http://www.w3.org/2000/01/rdf-schema#label> ?genes_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ?genes.
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  FILTER (contains(lcase(str(?diseases_label)), "breast cancer"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 3
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes>, <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>]]
  
  
  Keyword: genes Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes
  Keyword: associated Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene
  Keyword: breast cancer [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> property <http://www.w3.org/2000/01/rdf-schema#label>]
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?genes ?genes_label ?side_effects ?side_effects_label WHERE {
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  ?genes <http://www.w3.org/2000/01/rdf-schema#label> ?genes_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?side_effects a <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>.
  

  {{ ?side_effects <http://www.w3.org/2002/07/owl#sameAs> ?diseases} UNION { ?diseases <http://www.w3.org/2002/07/owl#sameAs> ?side_effects}}.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ?genes.
  

  ?side_effects <http://www.w3.org/2000/01/rdf-schema#label> ?side_effects_label.
  

  FILTER (contains(lcase(str(?side_effects_label)), "breast_cancer"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 4
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes>, <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www.w3.org/2002/07/owl#sameAs> ] ---> <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>]]
  
  
  Keyword: genes Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes
  Keyword: associated Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene
  Keyword: breast cancer [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> property <http://www.w3.org/2000/01/rdf-schema#label>]
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?genes ?genes_label ?side_effects ?side_effects_label WHERE {
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  {{ ?diseases <http://www.w3.org/2002/07/owl#sameAs> ?side_effects} UNION { ?side_effects <http://www.w3.org/2002/07/owl#sameAs> ?diseases}}.
  

  ?genes <http://www.w3.org/2000/01/rdf-schema#label> ?genes_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ?genes.
  

  ?side_effects <http://www.w3.org/2000/01/rdf-schema#label> ?side_effects_label.
  

  FILTER (contains(lcase(str(?side_effects_label)), "breast_cancer"))
  

  }
  

  LIMIT 100



executing SPARQL...

• RESULT 5
  Spanning-Tree [weight=2.0, edges=[<http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ] ---> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/genes>, <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> --- [ <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/possibleDrug> ] ---> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>]]
  
  
  Keyword: genes [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> property <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/brandName>]
  Keyword: associated Match: http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene
  Keyword: breast cancer [Will be matched through a SPARQL filter on the class <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> property <http://www.w3.org/2000/01/rdf-schema#label>]
  
  SPARQL query:
  SELECT DISTINCT ?diseases ?diseases_label ?drugs ?drugs_brandname ?drugs_label ?genes ?genes_label WHERE {
  

  ?drugs <http://www.w3.org/2000/01/rdf-schema#label> ?drugs_label.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/possibleDrug> ?drugs.
  

  ?genes <http://www.w3.org/2000/01/rdf-schema#label> ?genes_label.
  

  ?diseases a <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>.
  

  ?diseases <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene> ?genes.
  

  ?diseases <http://www.w3.org/2000/01/rdf-schema#label> ?diseases_label.
  

  ?drugs <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/brandName> ?drugs_brandname.
  

  FILTER (contains(lcase(str(?diseases_label)), "breast cancer"))
  

  FILTER (contains(lcase(str(?drugs_brandname)), "genes"))
  

  }
  

  LIMIT 100



executing SPARQL...